Publikációk

  • Vernyik, V., Karcagi, I., Nagy I., Tímár, E. et al. (2020) Exploring the fitness benefits of genome reduction in Escherichia coli by a selection-driven approach. Nature Sci Rep 10, 7345. https://doi.org/10.1038/s41598-020-64074-5
  • Aparicio T, Nyerges A, Nagy I, Pal C, Martínez-García E, de Lorenzo V. (2020) Mismatch repair hierarchy of Pseudomonas putida revealed by mutagenic ssDNA recombineering of the pyrF gene. Environ Microbiol. Jan;22(1):45-58. doi: 10.1111/1462-2920.14814
  • Déri S, Borbás J, Hartai T, Hategan L, Csányi B, Visnyovszki Á, Madácsy T, Maléth J, Hegedűs Z, Nagy I, Arora R, Labro AJ, Környei L, Varró A, Sepp R, Ördög B. (2020)Impaired cytoplasmic domain interactions cause co-assembly defect and loss of function in the p.Glu293Lys KNCJ2 variant isolated from an Andersen-Tawil Syndrome patient. Cardiovasc Res. Aug 18:cvaa249. doi: 10.1093/cvr/cvaa249.
  • Boros É, Prontvai B, Kellermayer Z, Balogh P, Sarlós P, Vincze Á, Varga C, Maróti Z, Bálint B, Nagy I. (2020)Transcriptome Based Profiling of the Immune Cell Gene Signature in Rat Experimental Colitis and Human IBD Tissue Samples. Biomolecules. Jun 29;10(7):974. doi: 10.3390/biom10070974. PMID: 32610492; PMCID: PMC7407160.
  • Krisztina Krizsán, Éva Almási, Zsolt Merényi, Neha Sahu, Máté Virágh, Tamás Kószó, Stephen Mondo, Brigitta Kiss, Balázs Bálint, Ursula Kües, Kerrie Barry, Judit Cseklye, Botond Hegedüs, Bernard Henrissat, Jenifer Johnson, Anna Lipzen, Robin A Ohm, István Nagy, Jasmyn Pangilinan, Juying Yan, Yi Xiong, Igor V Grigoriev, David S Hibbett, László G Nagy (2019) Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi Proc Natl Acad Sci USA. Apr 9;116 (15):7409-7418. https://pubmed.ncbi.nlm.nih.gov/30902897/
  • Éva Almási, Neha Sahu, Krisztina Krizsán, Balázs Bálint, Gábor M Kovács, Brigitta Kiss, Judit Cseklye, Elodie Drula, Bernard Henrissat, István Nagy, Mansi Chovatia, Catherine Adam, Kurt LaButti, Anna Lipzen, Robert Riley, Igor V Grigoriev, László G Nagy (2019) Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae New Phytol. Oct;224 (2):902-915. https://pubmed.ncbi.nlm.nih.gov/31257601/
  • Florian Lamouchea, Djamel Gullyb, Anaïs Chaumereta, Nico Nouwenb, Camille Verlya, Olivier Pierrea, Coline Sciallanob, Joël Fardouxb, Christian Jeudyc, Attila Szücs, Samuel Mondya, Christophe Salonc, István Nagyd, Attila Keresztd, Yves Dessauxa, Eric Giraudb, Peter Mergaerta,, Benoit Alunnia (2019) Transcriptomic dissection of Bradyrhizobium sp. strain ORS285 in symbiosis with Aeschynomene spp. inducing different bacteroid morphotypes with contrasted symbiotic efficiency Society for Applied Microbiology and John Wiley & Sons Ltd https://doi.org/10.1111/1462-2920.14292
  • Táncsics A., Farkas M., Horváth B., Maróti G., Bradford L.M., Lueders T. and Kriszt B. (2019) Genome analysis provides insights into microaerobic toluene-degradation pathway of Zoogloea oleivorans BucT. Archives of Microbiology. https://doi.org/10.1007/s00203-019-01743-8
  • Éva Boros, István Nagy (2019) The Role of MicroRNAs upon Epithelial-to-Mesenchymal Transition in Inflammatory Bowel Disease. Cells , 8 (11), 1461
  • Endre Neparáczki, Zoltán Maróti, Tibor Kalmár, Kitti Maár, István Nagy, Dóra Latinovics, Ágnes Kustár, György Pálfi, Erika Molnár, Antónia Marcsik, Csilla Balogh, Gábor Lőrinczy, Szilárd Sándor Gál, Péter Tomka, Bernadett Kovacsóczy, László Kovács, István Raskó & Tibor Török (2019) Y-chromosome haplogroups from Hun, Avar and conquering Hungarian period nomadic people of the Carpathian Basin. Scientific Reports 9, 16569  doi:10.1038/s41598-019-53105-5
  • Scholl S, Popovic M, de la Rochefordiere A, Girard E, Dureau S, Mandic A, Koprivsek K, Samet N, Craina M, Margan M, Samuels S, Zijlmans H, Kenter G, Hillemanns P, Dema S, Dema A, Malenkovic G, Djuran B, Floquet A, Garbay D, Guyon F, Colombo PE, Fabbro M, Kerr C, Ngo C, Lecuru F, Campo ERD, Coutant C, Marchal F, Mesgouez-Nebout N, Fourchotte V, Feron JG, Morice P, Deutsch E, Wimberger P, Classe JM, Gleeson N, von der Leyen H, Minsat M, Dubot C, Gestraud P, Kereszt A, Nagy I, Balint B, Berns E, Jordanova E, Saint-Jorre N, Savignoni A, Servant N, Hupe P, de Koning L, Fumoleau P, Rouzier R, Kamal M. (2019) Clinical and genetic landscape of treatment naive cervical cancer: Alterations in PIK3CA and in epigenetic modulators associated with sub-optimal outcome. EBioMedicine. Apr 2. pii: S2352-3964(19)30214-2.
  • Ákos Nyerges Balázs Bálint Judit Cseklye István Nagy Csaba Pál Tamás Fehér (2019) CRISPR-interference based modulation of mobile genetic elements in bacteria. Synthetic Biology, https://doi.org/10.1093/synbio/ysz008
  • Bálint Kintses, Orsolya Méhi, Eszter Ari, Mónika Számel, Ádám Györkei, Pramod K. Jangir, István Nagy, Ferenc Pál, Gergely Fekete, Roland Tengölics, Ákos Nyerges, István Likó, Anita Bálint, Tamás Molnár, Balázs Bálint, Bálint Márk Vásárhelyi, Misshelle Bustamante, Balázs Papp & Csaba Pál (2019) Phylogenetic barriers to horizontal transfer of antimicrobial peptide resistance genes in the human gut microbiota. Nature Microbiology volume 4, pages 447–458 (2019) https://www.nature.com/articles/s41564-018-0313-5
  • Viktória Lázár, Ana Martins, Réka Spohn, Lejla Daruka, Gábor Grézal, Gergely Fekete, Mónika Számel, Pramod K Jangir, Bálint Kintses, Bálint Csörgő, Ákos Nyerges, Ádám Györkei, András Kincses, András Dér, Fruzsina R Walter, Mária A Deli, Edit Urbán, Zsófia Hegedűs, Gábor Olajos, Orsolya Méhi, Balázs Bálint, István Nagy, Tamás A Martinek, Balázs Papp & Csaba Pál (2018) Antibiotic-resistant bacteria show widespread collateral sensitivity to antimicrobial peptides. Nature Microbiology volume 3, pages718–731 https://www.nature.com/articles/s41564-018-0164-0
  • Dragos A., Martin M., Garcia CF., Kricks L., Pausch P., Heimerl T., Bálint B., Maróti G., Bange G., López D., Lieleg O. and Kovács ÁT. (2018) Collapse of genetic division of labor and evolution of autonomy in pellicle biofilms. Nature Microbiology, https://doi.org/10.1038/s41564-018-0263-yÁkos Nyerges, Bálint Csörgő, Gábor Draskovits, Bálint Kintses, Petra Szili, Györgyi Ferenc, Tamás Révész, Eszter Ari, István Nagy, Balázs Bálint, Bálint Márk Vásárhelyi, Péter Bihari, Mónika Számel, Dávid Balogh, Henrietta Papp, Dorottya Kalapis, Balázs Papp, and Csaba Pál: Directed evolution of multiple genomic loci allows the prediction of antibiotic resistance PNAS June 5, 2018. 201801646; published ahead of print June 5, 2018. https://doi.org/10.1073/pnas.1801646115
  • Barna B., Gémes K., Domoki M., Bernula D., Ferenc G., Bálint B., Nagy I. and Fehér A. (2018) Arabidopsis NAP-related proteins (NRPs) contribute to the coordination of plant growth, developmental rate, and age-related pathogen resistance under short days Plant Science 267: 124-134
  • Tiricz H., Nagy B., Ferenc G., Török K., Nagy I., Dudits D. and Ayaydin F. (2018) Relaxed chromatin induced by histone deacetylase inhibitors improves the oligonucleotide-directed gene editing in plant cells Journal of Plant Research 131(1):179-189
  • Braskó C., Smith K., Molnár C., Hegedus L., Bálind Á., Faragó N., Paavolainen L., Balassa T., Szkalisity Á., Sükösd F., Bálint B., Enyedi M.Z., Nagy I., Puskás L.G., Haracska L., Tamás G. and Horváth P. (2018) Intelligent image-based in situ single-cell isolation. Nature Communications 9:226
  • Kukolya J., Bata-Vidács I., Luzics S., Tóth E., Kéki Z., Schumann P., Táncsics A., Nagy I., Olasz F. and Tóth Á. (2018) Xylanibacillus composti gen. nov., sp. nov. isolated from compost. International Journal of Systematic and Evolutionary Microbiology 68(3):698-702
  • Umenhoffer K., Draskovits G., Nyerges Á., Karcagi I., Bogos B., Tímár E., Csörgo B., Herczeg R., Nagy I., Fehér T., Pál C., Pósfai G (2017) Genome-wide abolishment of mobile genetic elements allows the efficient stabilization of a bacterial chassis. ACS Synthetic Biology 6(8): 1471–1483
  • Sipos G, Prasanna A.N., Walter M.C., O’Connor E., Bálint B., Krizsán K., Kiss B., Hess J., Varga T., Slot J., Riley R., Bóka B., Rigling D., Barry K., Lee J., Mihaltcheva S., LaButti K., Lipzen A., Waldron R., Moloney N.M., Sperisen C., Kredics L., Vágvölgyi C., Patrignani A., Fitzpatrick D., Nagy I., Doyle S., Anderson J., Grigoriev I.V., Güldener U., Münsterkötter M., Nagy L.G.  (2017) Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria. Nature Ecology and Evolution 1(12):1931-1941
  • Sanne Samuels, Balazs Balint, Heiko von der Leyen, Philippe Hupé, Leanne de Koning, Choumouss Kamoun, Windy Luscap-Rondof, Ulrike Wittkop, Ksenia Bagrintseva, Marina Popovic, Attila Kereszt, Els Berns, Gemma G Kenter, Ekaterina S Jordanova, Maud Kamal and Susy Scholl: Precision medicine in cancer: challenges and recommendations from an EU-funded cervical cancer biobanking study. British Journal of Cancer 115, 1575-1583 (6 December 2016) | doi:10.1038/bjc.2016.340
  • Jesús Montiel, J. Allan Downie, Attila Farkas, Péter Bihari, Róbert Herczeg, Balázs Bálint, Peter Mergaert, Attila Kereszt, and Éva Kondorosi: Morphotype of bacteroids in different legumes correlates with the number and type of symbiotic NCR peptides PNAS (doi: 10.1073/pnas.1704217114)
  • Robert Sepp, Lidia Hategan, Attila Bácsi, Judit Cseklye, László Környei, János Borbás, Márta Széll, Tamás Forster, István Nagy, and Zoltán Hegedűs (2017): Timothy Syndrome 1 Genotype without Syndactyly and Major Extracardiac Manifestations. American Journal of Medical Genetics, Volume 173, Issue 3, http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.38084/full
  • Nyerges Á., Csörgő B., Nagy I., Bálint B., Bihari P., Lázár V., Apjok G., Umenhoffer K., Bogos B., Pósfai G. and Pál C. (2016) A highly precise and portable genome engineering method allows comparison of mutational effects across bacterial species. PNAS 9:2502-2507
  • Dragos A., Lakshmanan N., Martin M., Horváth B., Maróti G., Garcia C.F., Lieleg O., Kovács Á.T. (2017) Evolution of exploitative interactions during diversification in Bacillus subtilis biofilms, FEMS Microbiol. Ecol., doi: FEMSEC-17-08-0400.R2
  • Sváb D., Bálint B., Vásárhelyi B., Maróti G. and Tóth I. (2017) Comparative genomic and phylogenetic analysis of a Shiga toxin producing Shigella sonnei (STSS) strain. Frontiers in Cell Inf Microbiol. 7:229. doi: 10.3389/fcimb.2017.00229
  • Martin M., Dragos A., Hölscher T., Maróti G., Bálint B., Westermann M. and Kovács Á.T. (2017) De novo evolved interference competition promotes the spread of biofilm defectors. Nature Communications doi: 10.1038/NCOMMS15127
  • Hegedűs B., Kós P., Bálint B., Maróti G., Gan M., Perei K. and Rákhely G. (2017) Complete genome sequence of Novosphingobium resinovorum SA1, a versatile xenobiotic-degrading bacterium capable of utilizing sulfanilic acid. J. Biotech. 241:76-80. doi: 10.1016/j.jbiotec.2016.11.013.
  • Szappanos B., Fritzemeier J.C., Csörgő B., Lázár V., Lu X., Fekete G., Bálint B., Herczeg R., Nagy I., Notebaart R.A., Lercher M.J., Pál C. and Papp B. (2016) Adaptive evolution of complex innovations through step-wise metabolic niche expansion Nature Communications 7:11607
  • Tóth Á., Barna T., Szabó E., Elek R., Hubert Á., Nagy I., Nagy I., Kriszt B., Táncsics A. and Kukolya J. (2016) Cloning, expression and biochemical characterisation of endomannanases from Thermobifida species isolated from different niches. PLoS One 11(5): e70155769
  • Sóki J., Hedberg M., Patrick S., Bálint B., Herczeg R., Nagy I., Hecht D.W., Nagy E. and Urbán E. (2016) Emergence and evolution of an international clone of multi-resistant Bacteroides fragilis isolates Journal of Antimicrobial Chemotherapy Sep;71(9):2441-8
  • Sváb D., Bálint B., Maróti G. and Tóth I. (2016) Cytolethal distending toxin producing Escherichia coli O157:H43 strain T22 represents a novel evolutionary lineage within the O157 serogroup. Infect Genet Evol. 46:110-117. doi: 10.1016/j.meegid.2016.11.003.
    Lakatos G., Deák Zs., Vass I., Rétfalvi T., Rozgonyi Sz., Rákhely G., Ördög V., Kondorosi É., Maróti G. (2014) Bacterial symbionts enhance photo-fermentative hydrogen evolution of Chlamydomonas algae. Green Chemistry doi:10.1039/C4GC00745J
  • Boboescu I. Z., Ilie M., Gherman V.D., Mirel I., Pap B., Negrea A., Kondorosi É., Bíró T., Maróti G. (2014) Revealing the factors influencing a fermentative biohydrogen production process using industrial wastewater as fermentation substrate. Biotechnology for Biofuels
  • Boboescu I. Z., Gherman V. D., Mirel I., Pap B, Tengölics R., Rákhely G., Kovács K.L., Kondorosi E., Maróti G. (2014) Simultaneous biohydrogen production and wastewater treatment based on the selective enrichment of the fermentation ecosystem. International Journal of Hydrogen Energy 39:1502-1510.
  • Tukacs-Hájos A., Pap B., Maróti G., Szendefy J., Szabó P., Rétfalvi T. (2014) Monitoring of thermophilic adaptation of mesophilic anaerobe fermentation of sugar beet pressed pulp. Bioresource Technol. 166:288-294.
  • Pap B., Boboescu I. Z., Szendefy J., Tukacs-Hájos A., Rétfalvi T., Maróti G. (2014) Metagenomic monitoring of microbial communities in biogas reactors upon temperature adaptation. In: Kémia, Környezettudomány, Fenntarthatóság (eds. Alber L., Szabó P.) pp. 61-65. Nyugat-magyarországi Egyetem Kiadója.
  • Scholl S.M., Kamal M., De Koning L., Kereszt A., Jordanova E.S., Ungureanu S., Berns E., Sastre X. (2013) HPV pathway profiling: HPV related cervical dysplasia and carcinoma studies. Curr Pharm Des 19:1379-1394.